A data analysis pipeline for shotgun mass-spectrometry proteomics.
Open source and targeted at the needs of academic core facilities.
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Development of CPFP at the University of Oxford and UT Southwestern Medical Center has been funded by: John Fell OUP Research Fund, Edward Penley Abraham Fund, European Research Council FP7 (233240), Cancer Research & Prevention Institute of Texas (RP120613 / R1121).
CPFP incorporates open-source software including the Trans-Proteomic Pipeline (TPP), OMSSA, X!Tandem.
CPFP version 2.1.1 @ cpfp (proteomics.swmed.edu)
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CPFP is built on the ISB Trans-Proteomic Pipeline, GPM X!Tandem, and NCBI OMSSA.