Experiments / Builds

In Confetti an experiment or build is an assembly of peptide and protein identifications from a single originating sample. A build is produced from many analyses of the same sample using various digest, fractionation, and mass-spectrometry methods.

Peptide identification is performed using X!Tandem, OMSSA and PeptideProphet/iProphet within CPFP: the Central Proteomics Facilities Pipeline. Protein inference is performed across all of the MS analyses in the experiment using a minimal set cover algorithm, giving a picture of protein coverage across multiple enzyme and instrument combinations. PSM, peptide, and protein numbers are given filtered to an 1% PSM, peptide, or protein FDR estimated using decoy sequences. A double-decoy database is used so that FDR estimation does not use decoys previously considered in model-fiting.

There are 50 experiments/builds available in the current version of Confetti:

Showing main Confetti builds only. To view coverage for subset builds (limited to single or smaller sets of digests/instrumentation) click here.

Hela Trypsin CID

UTSW HeLa Lysate, Trypsin CID

Description:

74202 PSMs were identified at a 1% PSM FDR.
23095 unique peptides were identified at a 1% peptide FDR.
3510 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID

Hela Trypsin HCD

UTSW HeLa Lysate, Trypsin HCD

Description:

85984 PSMs were identified at a 1% PSM FDR.
26964 unique peptides were identified at a 1% peptide FDR.
4024 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD

Hela Trypsin ETD

UTSW HeLa Lysate, Trypsin ETD

Description:

29796 PSMs were identified at a 1% PSM FDR.
6867 unique peptides were identified at a 1% peptide FDR.
1317 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin Unfractionated ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite ETD

Hela Trypsin CID-ETD

UTSW HeLa Lysate, Trypsin CID-ETD

Description:

57136 PSMs were identified at a 1% PSM FDR.
18317 unique peptides were identified at a 1% peptide FDR.
2970 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD

Hela Trypsin CID HCD

UTSW HeLa Lysate, Trypsin CID HCD

Description:

160186 PSMs were identified at a 1% PSM FDR.
32585 unique peptides were identified at a 1% peptide FDR.
4196 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD

Hela Trypsin All

UTSW HeLa Lysate, Trypsin All

Description:

247118 PSMs were identified at a 1% PSM FDR.
34230 unique peptides were identified at a 1% peptide FDR.
4202 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Trypsin Unfractionated ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite ETD

Hela Single CID

UTSW HeLa Lysate, Single CID

Description:

330834 PSMs were identified at a 1% PSM FDR.
77452 unique peptides were identified at a 1% peptide FDR.
4523 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID

Hela Single HCD

UTSW HeLa Lysate, Single HCD

Description:

364456 PSMs were identified at a 1% PSM FDR.
90886 unique peptides were identified at a 1% peptide FDR.
5160 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD

Hela Single ETD

UTSW HeLa Lysate, Single ETD

Description:

138616 PSMs were identified at a 1% PSM FDR.
30430 unique peptides were identified at a 1% peptide FDR.
2534 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN Unfractionated ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite ETD
LysC Unfractionated ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite ETD
Trypsin Unfractionated ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite ETD
ArgC Unfractionated ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite ETD
Elastase Unfractionated ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite ETD
Chymotrypsin Unfractionated ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite ETD
GluC Unfractionated ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite ETD

Hela Single CID-ETD

UTSW HeLa Lysate, Single CID-ETD

Description:

259360 PSMs were identified at a 1% PSM FDR.
63910 unique peptides were identified at a 1% peptide FDR.
4042 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID-ETD
Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID-ETD
LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID-ETD
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD

Hela Single CID HCD

UTSW HeLa Lysate, Single CID HCD

Description:

695290 PSMs were identified at a 1% PSM FDR.
115081 unique peptides were identified at a 1% peptide FDR.
5277 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD

Hela Single All

UTSW HeLa Lysate, Single All

Description:

1093266 PSMs were identified at a 1% PSM FDR.
123998 unique peptides were identified at a 1% peptide FDR.
5269 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID-ETD
Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID-ETD
LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID-ETD
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN Unfractionated ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite ETD
LysC Unfractionated ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite ETD
Trypsin Unfractionated ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite ETD
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite ETD
Elastase Unfractionated ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite ETD
Chymotrypsin Unfractionated ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite ETD
GluC Unfractionated ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite ETD
Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD

Hela Single/Double CID

UTSW HeLa Lysate, Single/Double CID

Description:

1258145 PSMs were identified at a 1% PSM FDR.
167447 unique peptides were identified at a 1% peptide FDR.
4577 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID

Hela Single/Double HCD

UTSW HeLa Lysate, Single/Double HCD

Description:

1431256 PSMs were identified at a 1% PSM FDR.
200759 unique peptides were identified at a 1% peptide FDR.
5196 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

Hela Single/Double CID-ETD

UTSW HeLa Lysate, Single/Double CID-ETD

Description:

644275 PSMs were identified at a 1% PSM FDR.
122089 unique peptides were identified at a 1% peptide FDR.
4158 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID-ETD
Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID-ETD
LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID-ETD
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Elastase-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD

Hela Single/Double CID HCD

UTSW HeLa Lysate, Single/Double CID HCD

Description:

2689401 PSMs were identified at a 1% PSM FDR.
254977 unique peptides were identified at a 1% peptide FDR.
5241 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

Hela Single/Double All

UTSW HeLa Lysate, Single/Double All

Description:

3472292 PSMs were identified at a 1% PSM FDR.
270294 unique peptides were identified at a 1% peptide FDR.
5307 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID-ETD
Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID-ETD
LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID-ETD
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN Unfractionated ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite ETD
LysC Unfractionated ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite ETD
Trypsin Unfractionated ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite ETD
Elastase-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite ETD
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
Elastase Unfractionated ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite ETD
Chymotrypsin Unfractionated ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite ETD
GluC Unfractionated ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite ETD
ArgC-AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

Hela Single/Double/Triple CID

UTSW HeLa Lysate, Single/Double/Triple CID

Description:

1516145 PSMs were identified at a 1% PSM FDR.
191887 unique peptides were identified at a 1% peptide FDR.
4653 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID

Hela Single/Double/Triple HCD

UTSW HeLa Lysate, Single/Double/Triple HCD

Description:

1708938 PSMs were identified at a 1% PSM FDR.
223089 unique peptides were identified at a 1% peptide FDR.
5215 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
AspN-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo QExactive HCD
AspN-GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo QExactive HCD
AspN-GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo QExactive HCD
AspN-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
GluC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

Hela Single/Double/Triple CID HCD

UTSW HeLa Lysate, Single/Double/Triple CID HCD

Description:

3225083 PSMs were identified at a 1% PSM FDR.
288393 unique peptides were identified at a 1% peptide FDR.
5275 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
AspN-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo QExactive HCD
AspN-GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo QExactive HCD
AspN-GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo QExactive HCD
AspN-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
GluC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

Hela Single/Double/Triple All

UTSW HeLa Lysate, Single/Double/Triple All

Description:

4007974 PSMs were identified at a 1% PSM FDR.
302494 unique peptides were identified at a 1% peptide FDR.
5333 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID-ETD
Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID-ETD
LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID-ETD
Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN Unfractionated ETD UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite ETD
LysC Unfractionated ETD UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite ETD
Trypsin Unfractionated ETD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite ETD
Elastase-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC Unfractionated ETD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite ETD
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
Elastase Unfractionated ETD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite ETD
Chymotrypsin Unfractionated ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite ETD
GluC Unfractionated ETD UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite ETD
AspN-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
AspN-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo QExactive HCD
AspN-GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo QExactive HCD
AspN-GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo QExactive HCD
AspN-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
GluC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
ArgC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-GluC Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-LysC Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID-ETD
GluC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Elastase Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Trypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID-ETD
AspN-Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
Chymotrypsin Unfractionated CID-ETD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID-ETD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

HEK293 SAX Trypsin CID

HEK293 Contaminated Lysate, SAX Trypsin CID

Description:

678701 PSMs were identified at a 1% PSM FDR.
69862 unique peptides were identified at a 1% peptide FDR.
7064 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo Orbitrap Elite CID

HEK293 SAX Trypsin HCD

HEK293 Contaminated Lysate, SAX Trypsin HCD

Description:

734552 PSMs were identified at a 1% PSM FDR.
88007 unique peptides were identified at a 1% peptide FDR.
7764 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo QExactive HCD

HEK293 SAX Trypsin CID HCD

HEK293 Contaminated Lysate, SAX Trypsin CID HCD

Description:

1413253 PSMs were identified at a 1% PSM FDR.
101165 unique peptides were identified at a 1% peptide FDR.
7955 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo Orbitrap Elite CID
Trypsin SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo QExactive HCD

HEK293 SAX LysC CID

HEK293 Contaminated Lysate, SAX LysC CID

Description:

555436 PSMs were identified at a 1% PSM FDR.
35879 unique peptides were identified at a 1% peptide FDR.
5878 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
LysC SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo Orbitrap Elite CID

HEK293 SAX LysC HCD

HEK293 Contaminated Lysate, SAX LysC HCD

Description:

586943 PSMs were identified at a 1% PSM FDR.
48936 unique peptides were identified at a 1% peptide FDR.
6807 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
LysC SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo QExactive HCD

HEK293 SAX LysC CID HCD

HEK293 Contaminated Lysate, SAX LysC CID HCD

Description:

1142379 PSMs were identified at a 1% PSM FDR.
55408 unique peptides were identified at a 1% peptide FDR.
6930 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
LysC SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo Orbitrap Elite CID
LysC SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo QExactive HCD

Hela SAX GluC CID

UTSW HeLa Lysate, SAX GluC CID

Description:

223565 PSMs were identified at a 1% PSM FDR.
17436 unique peptides were identified at a 1% peptide FDR.
3483 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID

Hela SAX GluC HCD

UTSW HeLa Lysate, SAX GluC HCD

Description:

198848 PSMs were identified at a 1% PSM FDR.
14471 unique peptides were identified at a 1% peptide FDR.
2500 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD

Hela SAX GluC CID HCD

UTSW HeLa Lysate, SAX GluC CID HCD

Description:

422413 PSMs were identified at a 1% PSM FDR.
21817 unique peptides were identified at a 1% peptide FDR.
3611 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD

Hela SAX AspN CID

UTSW HeLa Lysate, SAX AspN CID

Description:

243576 PSMs were identified at a 1% PSM FDR.
25782 unique peptides were identified at a 1% peptide FDR.
5665 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID

Hela SAX AspN HCD

UTSW HeLa Lysate, SAX AspN HCD

Description:

374999 PSMs were identified at a 1% PSM FDR.
29856 unique peptides were identified at a 1% peptide FDR.
5614 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD

Hela SAX AspN CID HCD

UTSW HeLa Lysate, SAX AspN CID HCD

Description:

618575 PSMs were identified at a 1% PSM FDR.
36518 unique peptides were identified at a 1% peptide FDR.
6063 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID

Hela SAX ArgC-Trypsin HCD

UTSW HeLa Lysate, SAX ArgC-Trypsin HCD

Description:

421500 PSMs were identified at a 1% PSM FDR.
44767 unique peptides were identified at a 1% peptide FDR.
4894 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD

HEK293 SAX Chymotrypsin-Trypsin CID

HEK293 Contaminated Lysate, SAX Chymotrypsin-Trypsin CID

Description:

531629 PSMs were identified at a 1% PSM FDR.
66283 unique peptides were identified at a 1% peptide FDR.
5595 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Chymotrypsin-Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID

HEK293/HeLa SAX All Digests CID

HEK293 Contaminated HeLa Lysate, SAX All Digests CID

Description:

2232907 PSMs were identified at a 1% PSM FDR.
171237 unique peptides were identified at a 1% peptide FDR.
7933 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo Orbitrap Elite CID
LysC SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo Orbitrap Elite CID
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID

HEK293/HeLa SAX All Digests HCD

HEK293 Contaminated HeLa Lysate, SAX All Digests HCD

Description:

2316842 PSMs were identified at a 1% PSM FDR.
175552 unique peptides were identified at a 1% peptide FDR.
7975 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
Trypsin SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo QExactive HCD
LysC SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo QExactive HCD
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD

HEK293/HeLa SAX All Digests CID HCD

HEK293 Contaminated HeLa Lysate, SAX All Digests CID HCD

Description:

4549749 PSMs were identified at a 1% PSM FDR.
237294 unique peptides were identified at a 1% peptide FDR.
8554 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo Orbitrap Elite CID
LysC SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo Orbitrap Elite CID
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID
Trypsin SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo QExactive HCD
LysC SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo QExactive HCD
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD
Chymotrypsin-Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID

Confetti HeLa/HEK293 Build 1.1

HEK293 Contaminated HeLa Lysate, Unfractionated and SAX, CID & HCD

Description:

7774832 PSMs were identified at a 1% PSM FDR.
430737 unique peptides were identified at a 1% peptide FDR.
8624 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
AspN-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo QExactive HCD
AspN-GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo QExactive HCD
AspN-GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo QExactive HCD
AspN-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
GluC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo Orbitrap Elite CID
LysC SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo Orbitrap Elite CID
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID
Trypsin SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate Trypsin SAX HEK293 Thermo QExactive HCD
LysC SAX HEK293 HCD HEK293 Contaminated HeLa whole cell lysate LysC SAX HEK293 Thermo QExactive HCD
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD
Chymotrypsin-Trypsin SAX HEK293 CID HEK293 Contaminated HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD

Hela SAX Trypsin CID

UTSW Corrected HeLa Lysate, SAX Trypsin CID

Description:

819932 PSMs were identified at a 1% PSM FDR.
40325 unique peptides were identified at a 1% peptide FDR.
5283 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo Orbitrap Elite CID

Hela SAX Trypsin HCD

UTSW Corrected HeLa Lysate, SAX Trypsin HCD

Description:

907772 PSMs were identified at a 1% PSM FDR.
55752 unique peptides were identified at a 1% peptide FDR.
6407 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX HCD UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo QExactive HCD

Hela SAX Trypsin CID HCD

UTSW Corrected HeLa Lysate, SAX Trypsin CID HCD

Description:

1727704 PSMs were identified at a 1% PSM FDR.
61216 unique peptides were identified at a 1% peptide FDR.
6375 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo Orbitrap Elite CID
Trypsin SAX HCD UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo QExactive HCD

Hela SAX LysC CID

UTSW Corrected HeLa Lysate, SAX LysC CID

Description:

341702 PSMs were identified at a 1% PSM FDR.
15227 unique peptides were identified at a 1% peptide FDR.
3452 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
LysC SAX CID UTSW Corrected HeLa whole cell lysate LysC SAX Thermo Orbitrap Elite CID

Hela SAX LysC HCD

UTSW Corrected HeLa Lysate, SAX LysC HCD

Description:

391042 PSMs were identified at a 1% PSM FDR.
24623 unique peptides were identified at a 1% peptide FDR.
4667 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
LysC SAX HCD UTSW Corrected HeLa whole cell lysate LysC SAX Thermo QExactive HCD

Hela SAX LysC CID HCD

UTSW Corrected HeLa Lysate, SAX LysC CID HCD

Description:

732744 PSMs were identified at a 1% PSM FDR.
26187 unique peptides were identified at a 1% peptide FDR.
4481 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
LysC SAX HCD UTSW Corrected HeLa whole cell lysate LysC SAX Thermo QExactive HCD
LysC SAX CID UTSW Corrected HeLa whole cell lysate LysC SAX Thermo Orbitrap Elite CID

Hela SAX Chymotrypsin-Trypsin CID

UTSW Corrected HeLa Lysate, SAX Chymotrypsin-Trypsin HCD

Description:

1013176 PSMs were identified at a 1% PSM FDR.
41700 unique peptides were identified at a 1% peptide FDR.
4393 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
Chymotrypsin-Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID

Hela SAX All Digests CID

UTSW Corrected HeLa Lysate, SAX All Digests CID

Description:

2641951 PSMs were identified at a 1% PSM FDR.
119294 unique peptides were identified at a 1% peptide FDR.
6737 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID
Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID
LysC SAX CID UTSW Corrected HeLa whole cell lysate LysC SAX Thermo Orbitrap Elite CID

Hela SAX All Digests HCD

UTSW Corrected HeLa Lysate, SAX All Digests HCD

Description:

2294161 PSMs were identified at a 1% PSM FDR.
134563 unique peptides were identified at a 1% peptide FDR.
7184 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD
LysC SAX HCD UTSW Corrected HeLa whole cell lysate LysC SAX Thermo QExactive HCD
Trypsin SAX HCD UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo QExactive HCD

Hela SAX All Digests CID HCD

UTSW Corrected HeLa Lysate, SAX All Digests CID HCD

Description:

4936112 PSMs were identified at a 1% PSM FDR.
179012 unique peptides were identified at a 1% peptide FDR.
7690 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD
Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID
LysC SAX HCD UTSW Corrected HeLa whole cell lysate LysC SAX Thermo QExactive HCD
LysC SAX CID UTSW Corrected HeLa whole cell lysate LysC SAX Thermo Orbitrap Elite CID
Trypsin SAX HCD UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo QExactive HCD

Confetti HeLa Build 1.2

UTSW Corrected HeLa Lysate, Unfractionated and SAX, CID & HCD

Description:

8161195 PSMs were identified at a 1% PSM FDR.
383334 unique peptides were identified at a 1% peptide FDR.
7815 protein groups were inferred at a 1% protein FDR.

Name Sample Digest Fractionation Instrument Fragmentation
AspN-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
AspN-Elastase Unfractionated CID UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo Orbitrap Elite CID
AspN-GluC Unfractionated CID UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo Orbitrap Elite CID
AspN-LysC Unfractionated CID UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo Orbitrap Elite CID
AspN-Trypsin Unfractionated CID UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo Orbitrap Elite CID
AspN Unfractionated CID UTSW HeLa whole cell lysate AspN Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
Elastase Unfractionated CID UTSW HeLa whole cell lysate Elastase Unfractionated Thermo Orbitrap Elite CID
Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
GluC-Elastase Unfractionated CID UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo Orbitrap Elite CID
GluC-LysC Unfractionated CID UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo Orbitrap Elite CID
GluC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo Orbitrap Elite CID
LysC Unfractionated CID UTSW HeLa whole cell lysate LysC Unfractionated Thermo Orbitrap Elite CID
LysC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
LysC-Elastase Unfractionated CID UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo Orbitrap Elite CID
LysC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo Orbitrap Elite CID
Trypsin Unfractionated CID UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo Orbitrap Elite CID
GluC Unfractionated CID UTSW HeLa whole cell lysate GluC Unfractionated Thermo Orbitrap Elite CID
Elastase Unfractionated HCD UTSW HeLa whole cell lysate Elastase Unfractionated Thermo QExactive HCD
GluC Unfractionated HCD UTSW HeLa whole cell lysate GluC Unfractionated Thermo QExactive HCD
Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Trypsin Unfractionated Thermo QExactive HCD
LysC Unfractionated HCD UTSW HeLa whole cell lysate LysC Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo QExactive HCD
AspN Unfractionated HCD UTSW HeLa whole cell lysate AspN Unfractionated Thermo QExactive HCD
LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC Unfractionated Thermo QExactive HCD
GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Elastase-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Trypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin-Trypsin Unfractionated Thermo Orbitrap Elite CID
Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC Unfractionated Thermo QExactive HCD
AspN-GluC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC Unfractionated Thermo QExactive HCD
AspN-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin Unfractionated Thermo QExactive HCD
Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated CID UTSW HeLa whole cell lysate ArgC Unfractionated Thermo Orbitrap Elite CID
ArgC Unfractionated HCD UTSW HeLa whole cell lysate ArgC Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated CID UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-AspN Unfractionated CID UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo Orbitrap Elite CID
ArgC-Chymotrypsin Unfractionated CID UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated CID UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo Orbitrap Elite CID
ArgC-GluC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-GluC Unfractionated Thermo QExactive HCD
ArgC-AspN Unfractionated HCD UTSW HeLa whole cell lysate ArgC-AspN Unfractionated Thermo QExactive HCD
ArgC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Chymotrypsin Unfractionated Thermo QExactive HCD
ArgC-LysC Unfractionated HCD UTSW HeLa whole cell lysate ArgC-LysC Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated CID UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo Orbitrap Elite CID
ArgC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Trypsin Unfractionated Thermo QExactive HCD
ArgC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate ArgC-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
AspN-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
AspN-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-GluC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Elastase Unfractionated Thermo QExactive HCD
AspN-GluC-LysC Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-LysC Unfractionated Thermo QExactive HCD
AspN-GluC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-GluC-Trypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
AspN-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Elastase Unfractionated Thermo QExactive HCD
AspN-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate AspN-LysC-Trypsin Unfractionated Thermo QExactive HCD
Chymotrypsin-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate Chymotrypsin-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
GluC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
GluC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
GluC-LysC-Elastase Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Elastase Unfractionated Thermo QExactive HCD
GluC-LysC-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate GluC-LysC-Trypsin Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Elastase Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Elastase Unfractionated Thermo QExactive HCD
LysC-Chymotrypsin-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin-Trypsin Unfractionated Thermo QExactive HCD
LysC-Elastase-Trypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Elastase-Trypsin Unfractionated Thermo QExactive HCD
AspN SAX HCD UTSW HeLa whole cell lysate AspN SAX Thermo QExactive HCD
GluC SAX CID UTSW HeLa whole cell lysate GluC SAX Thermo Orbitrap Elite CID
AspN SAX CID UTSW HeLa whole cell lysate AspN SAX Thermo Orbitrap Elite CID
GluC SAX HCD UTSW HeLa whole cell lysate GluC SAX Thermo QExactive HCD
ArgC-Trypsin SAX HCD UTSW HeLa whole cell lysate ArgC-Trypsin SAX Thermo QExactive HCD
LysC-Chymotrypsin Unfractionated HCD UTSW HeLa whole cell lysate LysC-Chymotrypsin Unfractionated Thermo QExactive HCD
Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo Orbitrap Elite CID
Chymotrypsin-Trypsin SAX CID UTSW Corrected HeLa whole cell lysate Chymotrypsin-Trypsin SAX Thermo Orbitrap Elite CID
LysC SAX HCD UTSW Corrected HeLa whole cell lysate LysC SAX Thermo QExactive HCD
LysC SAX CID UTSW Corrected HeLa whole cell lysate LysC SAX Thermo Orbitrap Elite CID
Trypsin SAX HCD UTSW Corrected HeLa whole cell lysate Trypsin SAX Thermo QExactive HCD

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