Publications

2007Yu, P. and Kodadek, T. (2007) “Dynammics of the Hypoxia-Inducible Factor-1-VEGF promoter complex” Submitted.

Lim, H.-S., Cai, D. and Kodadek, T. (2007) “Chemical cross-linking reveals Sug2/Rpt4 as the molecular target of a peptoid inhibitor of the 19S proteasome regulatory particle” Submitted.

Udugamasooriya, D.G., Dineen, S.P., Brekken, R.A. and Kodadek, T. (2007) “A peptoid ‘antibody surrogate’ that antagonizes VEGF Receptor 2 activity” Submitted.

Sikder, D. and Kodadek, T. (2007) “The neurohormone orexin stimulates hypoxia-inducible factor-1 activity” Submitted.

Kwon, Y.-U. and Kodadek, T. (2007) “Quantitative comparison of the relative cell permeability of cyclic and linear peptides” Chem. & Biol. 14, 671-677.

Lim, H.-Y., Archer, C.T. and Kodadek, T. (2007) “Identification of a peptoid inhibitor of the proteasome 19S regulatory particle” J. Amer. Chem. Soc. 129, 7750-7751.

Yu, P. and Kodadek, T. (2007) “A convenient, high-throughput strategy for measuring the relative cell permeability of synthetic compounds” Nature Protocols 2, 23-30.

Kwon, Y.-U. and Kodadek, T. (2007) “Quantitative evaluation of the relative cell permeability of peptoids and peptides”J. Amer. Chem. Soc. 129, 1508-1509.

2006

Page, T., Sikder, D. Yang, L. Pluta, L., Wolfinger, R.D., Kodadek, T. and Thomas, R.S. (2006) Genome-wide analysis of human HSF1 signaling reveals a transcriptional program linked to cellular adaptation and survival” Molecular BioSystems, 2, 627-639.

Sikder, D., Johnston, S.A. and Kodadek, T. (2006) “Widespread, but non-identical, association of proteasomal 19S and 20S proteins with yeast chromatin” J. Biol. Chem. 281, 27346-27355.

Kodadek, T., Sikder, D. and Nalley, K. (2006) “Keeping transcriptional activators under control” Cell 127, 261-264.

Nalley, K., Johnston, S.A. and Kodadek, T. (2006) “Proteolytic turnover of Gal4 is not required for function in vivo” Nature 442, 1054-1057.

Sikder, K. and Kodadek, T. (2006) “Optimized protocols for the isolation of specific protein-binding peptides or peptoids from combinatorial libraries displayed on beads” Molecular BioSystems 2, 25-35.

2005

Reddy, M.M. and Kodadek, T. (2005) “Protein ‘fingerprinting’ in complex mixtures using peptoid microarrays” Proc. Natl. Acad. Sci. USA 102, 12672-12677.

Li, S., Marthandan, N., Bowerman, D., Garner, H.R. and Kodadek, T. (2005) Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy” Chem. Comm., 581-583.

Sikder, D. and Kodadek, T. (2005) “Genomic studies of transcription factor-DNA interactions” Curr. Opin. Chem. Biol. 9, 38-45.

2004

Kodadek, T., Reddy, M.M., Olivos, H.J., Bachhawat-Sikder , K. and Alluri, P.G. (2004) “Synthetic molecules as antibody replacements” Acc. Chem. Res. 37, 711-718.

Moola, R., Bacchawat –Sikder, K. and Kodadek, T. (2004) “Transformation of low affinity lead compounds into high affinity protein capture agents”Chem. & Biol. 11, 1127-37.

Li, S., Bowerman, D.J., Marthandan, N., Garner, H.R. and Kodadek, T. (2004) “Photolithographic synthesis of peptoids” J. Amer. Chem. Soc. 126, 4088-4089.

Smith, A.H., Vrtis, J.M. and Kodadek, T. (2004) “The Potential of Protein-Detecting Microrrays for Clinical Diagnostics” Clinical Chem 37, 217-238.

Troitskaya, L. and Kodadek, T. (2004) “Peptides as modulators of enzymes and regulatory proteins”Methods 32, 406-415.

2003

Bacchawat-Sikder, K. and Kodadek, T. (2003) “Protein detecting microarrays for diagnostics and basic research”Clin. Lab. Intl. 27, 16-18.

Alluri, P.G. Reddy, M.M., Bacchawat-Sikder, K., Olivos, H.J. and Kodadek, T. (2003) “Isolation of protein ligands from large peptoid libraries” J. Amer. Chem. Soc. 125, 13995-14004.

Olivos, H.J., Bacchawat-Sikder, K. and Kodadek, T. (2003) “Quantum dots as a visual aid for screening bead-bound combinatorial libraries” ChemBiochem 4, 1242-1245.

Sikder, K. and Kodadek, T. (2003) “Mixed Element Capture Agents (MECAs): A Simple Strategy For the Construction of Synthetic, High Affinity Protein Capture Ligands” J. Amer. Chem. Soc. 125, 9550-9551.

Naffin, J.L., Han, Y. Sun, T., Reddy, M.M., Olivos, H.J., and Kodadek, T. (2003) “Immobilized peptides as high affinity capture agents for self-associating proteins” Chem. & Biol. 10, 251-259.